Bioconductor Gage package

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gage package gage

6.6 years ago melkile26 • 0

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gage gage package gene expression matrix gene set analysis

6.6 years ago atakanekiz ▴ 30

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3.1k

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gage package error

updated 6.7 years ago by James W. MacDonald 68k • written 6.7 years ago by Miskey, Csaba ▴ 20

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4.1k

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gage gage package pathview rna-seq

updated 2.9 years ago by Helen • 0 • written 7.0 years ago by tarun2 • 0

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2.2k

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kegg geneset genelist gage package

updated 7.5 years ago by Gordon Smyth 52k • written 7.5 years ago by sup230 ▴ 30

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1.7k

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gage package deseq2

7.5 years ago sup230 ▴ 30

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1.9k

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gage gage package

updated 8.3 years ago by Luo Weijun ★ 1.6k • written 8.3 years ago by Michael • 0

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1.7k

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R gage package rnaseq pathview

8.5 years ago joanito.liberti • 0

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1.1k

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gage package path.ids RNA-Seq

8.5 years ago rl1385 • 0

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1.1k

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t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment

8.6 years ago smt8n • 0

10 results • Page 1 of 1

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Comment: GSVA on RNAseq data by Bob ▴ 10

Hi Robert, We were actually very interested in this problem in particular. It seems that using counts for gene sets with varying gene leng…

Comment: plyranges: find exact GRanges match keeping metadata columns by Michael Love 43k

But I will say if you are doing a lot of these, and require exact match, just making it a simple key -- eg `paste0(start,".",end)` -- seems…

Answer: Comparing Mock vs Infected in WT and Knockout Cells by Michael Love 43k

I recommend for questions about statistical analysis plan to meet with a local statistician or someone familiar with linear models in R. I …

Answer: In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowi by ATpoint ★ 4.6k

WGCNA is no Bioconductor package. Consider biostars.org or bioinformatics Reddit, but if you do show a bit more effort please. People appre…

Answer: Error: lexical error: invalid char in json text (alevin-seurat) by ATpoint ★ 4.6k

Two things: 1) See https://bioconductor.org/packages/release/bioc/vignettes/tximport/inst/doc/tximport.html#Alevin -- Your `colon_file`…

Votes

A: how to extract Granges not overlapping with other ganges?

DESeq2 1.20.0 lfcshrink function

A: LIMMA on RT-PCR data

Answer: Efficiently working with HDF5-backed SingleCellExperiments

Efficiently working with HDF5-backed SingleCellExperiments

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