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gage package
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1.1k
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GAGE for non model organism
gage package
gage
6.7 years ago
melkile26
• 0
1
vote
2
replies
1.5k
views
GAGE analysis with the whole or a subset of matrix
gage
gage package
gene expression matrix
gene set analysis
6.8 years ago
atakanekiz
▴ 30
5
votes
7
replies
3.2k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 6.9 years ago by
James W. MacDonald
68k • written 6.9 years ago by
Miskey, Csaba
▴ 20
0
votes
2
replies
4.2k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage
gage package
pathview
rna-seq
updated 3.1 years ago by
Helen
• 0 • written 7.2 years ago by
tarun2
• 0
2
votes
4
replies
2.4k
views
Can't find gene list for KEGG genesets
kegg
geneset
genelist
gage package
updated 7.7 years ago by
Gordon Smyth
52k • written 7.7 years ago by
sup230
▴ 30
1
vote
0
replies
1.7k
views
DESeq2 - GAGE workflow
gage package
deseq2
7.7 years ago
sup230
▴ 30
0
votes
2
replies
1.9k
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage
gage package
updated 8.4 years ago by
Luo Weijun
★ 1.6k • written 8.5 years ago by
Michael
• 0
1
vote
2
replies
1.7k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R
gage package
rnaseq
pathview
8.7 years ago
joanito.liberti
• 0
0
votes
1
reply
1.1k
views
Question on Gage
gage package
path.ids
RNA-Seq
8.7 years ago
rl1385
• 0
0
votes
0
replies
1.1k
views
GAGE package statistical tests
t-test
GAGE package
Kolmogorov-Smirnov test
Gene-Set enrichment
8.8 years ago
smt8n
• 0
10 results • Page
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Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…
Comment: European Bioconductor Conference 2023 planning
by
ht
• 0
Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
njmcdirectportal.com
• 0
This is a great post. I like this topic. I found many interesting things from this site. Thanks for posting this again https://www.njmcdire…
Answer: Version conflict when pushing to scQTLtools devel branch
by
shepherl
4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …
Votes
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA
GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: biomaRt server error, and mirrors do not help
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