Showing : gage package • reset
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GAGE for non model organism
gage package gage
6.3 years ago melkile26 • 0
1
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2
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1.3k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
6.4 years ago atakanekiz ▴ 30
5
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7
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3.0k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 6.5 years ago by 67k • written 6.5 years ago by ▴ 20
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4.0k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 2.7 years ago by • 0 • written 6.8 years ago by • 0
2
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4
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2.1k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 7.3 years ago by 51k • written 7.3 years ago by ▴ 30
1
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0
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1.6k
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DESeq2 - GAGE workflow
gage package deseq2
7.3 years ago sup230 ▴ 30
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1.8k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 8.0 years ago by ★ 1.6k • written 8.1 years ago by • 0
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2
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
8.3 years ago joanito.liberti • 0
0
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1.1k
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Question on Gage
gage package path.ids RNA-Seq
8.3 years ago rl1385 • 0
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1.0k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
8.4 years ago smt8n • 0
10 results • Page 1 of 1
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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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