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gage package
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927
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GAGE for non model organism
gage package
gage
6.0 years ago
melkile26
• 0
1
vote
2
replies
1.2k
views
GAGE analysis with the whole or a subset of matrix
gage
gage package
gene expression matrix
gene set analysis
6.0 years ago
atakanekiz
▴ 30
5
votes
7
replies
2.8k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 6.1 years ago by
James W. MacDonald
66k • written 6.1 years ago by
Miskey, Csaba
▴ 20
0
votes
2
replies
3.7k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage
gage package
pathview
rna-seq
updated 2.3 years ago by
Helen
• 0 • written 6.4 years ago by
tarun2
• 0
2
votes
4
replies
1.8k
views
Can't find gene list for KEGG genesets
kegg
geneset
genelist
gage package
updated 6.9 years ago by
Gordon Smyth
51k • written 6.9 years ago by
sup230
▴ 30
1
vote
0
replies
1.5k
views
DESeq2 - GAGE workflow
gage package
deseq2
6.9 years ago
sup230
▴ 30
0
votes
2
replies
1.6k
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage
gage package
updated 7.7 years ago by
Luo Weijun
★ 1.6k • written 7.7 years ago by
Michael
• 0
1
vote
2
replies
1.5k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R
gage package
rnaseq
pathview
7.9 years ago
joanito.liberti
• 0
0
votes
1
reply
965
views
Question on Gage
gage package
path.ids
RNA-Seq
7.9 years ago
rl1385
• 0
0
votes
0
replies
941
views
GAGE package statistical tests
t-test
GAGE package
Kolmogorov-Smirnov test
Gene-Set enrichment
8.0 years ago
smt8n
• 0
10 results • Page
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Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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